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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
BRCA rs62449738 chr7:54799956 T/C 8.65E-6 1027 21.43 25.02 8.07 KM Plot
BRCA rs62449739 chr7:54800550 C/A 8.65E-6 1027 21.43 25.02 8.07 KM Plot
BRCA rs62449740 chr7:54801360 C/G 8.65E-6 1027 21.43 25.02 8.07 KM Plot
BRCA rs62449757 chr7:54802647 A/T 8.52E-6 1025 21.38 24.9 8.07 KM Plot
BRCA rs62449758 chr7:54803100 A/G 8.52E-6 1025 21.38 24.9 8.07 KM Plot
BRCA rs62449759 chr7:54807585 C/T 8.66E-6 1023 21.43 24.9 8.07 KM Plot
BRCA rs62451660 chr7:54808176 A/C 8.66E-6 1024 21.43 24.57 8.07 KM Plot
BRCA rs62451662 chr7:54809753 T/C 7.45E-6 1027 21.47 24.9 12.17 KM Plot
BRCA rs62451663 chr7:54810546 C/A 8.03E-6 1026 21.43 23.83 12.17 KM Plot
BRCA rs62451666 chr7:54811739 G/A 7.89E-6 1028 21.43 23.83 12.17 KM Plot
BRCA rs62451667 chr7:54814938 A/G 7.89E-6 1028 21.43 23.83 12.17 KM Plot
BRCA rs62451668 chr7:54817739 G/A 7.89E-6 1028 21.43 23.83 12.17 KM Plot
BRCA rs62451669 chr7:54818641 G/A 7.89E-6 1028 21.43 23.83 12.17 KM Plot
BRCA rs640027 chr12:53046387 A/T 1.63E-5 1010 20.73 26.28 14.7 KM Plot
BRCA rs649068 chr18:60142530 T/C 7.52E-6 1020 15.08 21.3 21.8 KM Plot